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Selected Publications

  1. Gutierrez, I, Tyler JK. A mortality timer based on nucleolar size triggers loss of nucleolar integrity and catastrophic genomic instability (2024) Nature Aging, In press PMID: PMID

  2. Chen, Z., Wang, X., Gao, X., Arslanovic, N., Chen, K., Tyler, J.K.. Transcriptional inhibition after irradiation occurs preferentially at highly expressed genes in a manner dependent on cell cycle progression (2024) Elife, In press PMID: 38045243

  3. Aguilar R, Khan L, Arslanovic N, Birmingham K, Kasliwal K, Posnikoff S, Chakraborty U, Hickman AR, Watson R, Ezell RJ, Willis HE, Cowles MW, Garner R, Shim A, Gutierrez I, Marunde MR, Keogh MC, Tyler JK. Multivalent binding of the tardigrade Dsup protein to chromatin promotes yeast survival and longevity upon exposure to oxidative damage (2023) Preprint PMID: 37546815

  4. ARosas R, Aguilar RR, Arslanovic N, Seck A, Smith DJ, Tyler JK, Churchill MEA. A novel single alpha-helix DNA-binding domain in CAF-1 promotes gene silencing and DNA damage survival through tetrasome-length DNA selectivity and spacer function (2023) ELife Jul 11:12e83538. PMID: 37432722

  5. Fowler FC, Chen BR, Zolnerowich N, Wu W, Pavani R, Paiano J, Peart C, Chen Z, Nussenzweig A, Sleckman BP, Tyler JK. DNA-PK promotes DNA end resection at DNA double strand breaks in G0 cells (2022) ELife May 16;11:e74700. PMID: 35575473

  6. Aguilar RR, Shen ZJ, Tyler JK. A Simple, Improved Method for Scarless Genome Editing of Budding Yeast Using CRISPR-Cas9 (2022) Methods Protoc. Oct 4;5(5):79. PMID: 36287051

  7. Fowler FC, Tyler JK. A Proximity Ligation Method to Detect Proteins Bound to Single-Stranded DNA after DNA End Resection at DNA Double-Strand Breaks (2021) Methods Protoc. Dec 29;5(1):3. PMID: 35076555

  8. Chen BR, Wang Y, Tubbs A, Zong D, Fowler FC, Zolnerowich N, Wu W, Bennett A, Chen CC, Feng W, Nussenzweig A, Tyler JK, Sleckman BP. LIN37-DREAM prevents DNA end resection and homologous recombination at DNA double-strand breaks in quiescent cells (2021) ELife Sep 3;10:e68466. PMID: 34477552

  9. Chakraborty, U., Shen, Z.J., and Tyler, J. Chaperoning histones at the DNA repair dance (2021) DNA Repair 108:103240. PMID: 34687987

  10. Mohan, C., Das, C., and Tyler, J. Histone and chromatin dynamics facilitating DNA repair (2021) DNA Repair 107:103183. PMID: 34419698

  11. Chen, B.R., Wang, Y., Tubbs, A., Zong, D., Fowler, F.C., Zolnerowich, N., Wu, W., Bennett, A., Chen, C.C., Feng, W., Nussenzweig, A., Tyler, J.K., Sleckman, B.P. LIN37-DREAM prevents DNA end resection and homologous recombination at DNA double-strand breaks in quiescent cells (2021) ELife 10:e68466. PMID: 34477552

  12. Kaeberlein, M. and Tyler, J.K. A new era for research in aging (2021) ELife 10:e65286. PMID: 33504426

  13. Shen, Z.J., Postnikoff, S., and Tyler, J.K. Is Gcn4-induced autophagy the ultimate downstream mechanism by which hormesis extends yeast replicative lifespan? (2019) Current Genetics 65(3):717-720 7. PMID: 30673825

  14. Gomes, A.P., Ilter, D., Low, V., Rosenaweig, A., Shen, Z.J., Schild, T., Rivas, M.A., Er, E.E., McNally., D.R., Mutvei, A.P., Han, J., Ou, Y., Cavaliere, P., Mullarky, E., Nagiec, M., Shin, S., Yoon, S.O., Dephoure, N., Massague, J., Melnick, A.M., Cantley, L.C., Tyler, J.K. and Blenis, J. Dynamic incorporation of histone H3 variants into chromatin is essential for acquisition of aggressive traits and metastatic colonization. (2019) Cancer Cell 25(4):402-417 7. PMID: 31564638

  15. Hu, Z., Xia, B., Postnikoff, S., Shen, Z-J, Harkness, T.A., Seol, J-H, Tomoiaga, A.S , Li, W., Chen, K and Tyler, J.K Ssd1 and Gcn2 suppress global translation efficiency in replicatively aged yeast while their activation extends lifespan. (2018) eLife August 17; 7. PMID: 30117416

  16. Huang, T, Fowler, F, Chen, C-C, Shen, Z-J, Sleckman, B and Tyler, J.K. The Histone Chaperones ASF1 and CAF-1 Promote MMS22L-TONSL-Mediated Rad51 Loading onto ssDNA during Homologous Recombination in Human Cells (2018) Molecular Cell Jul 25:1-12. PMID: 29478807

  17. Huang, T-H, Shen, Z-J, Sleckman, BP, Tyler, JK. The histone chaperone ASF1 regulates the activation of ATM and DNA-PKcs in response to DNA double-strand breaks (2018) Cell Cycle 69(5) 879-892. PMID: 29954236

  18. Pal, S, Postnikoff, S, Chavez, M and Tyler, J.K. Impaired cohesion and homologous recombination during replicative aging in budding yeast (2018) Science Advances 4(2). PMID: 29441364

  19. Postnikoff, S., Johnson, J. and Tyler, J.K. The integrated stress response in budding yeast lifespan extension (2017) Microbial Cell 4(11):368-375 PMID: 29167799

  20. Fowler, F., and Tyler, J.K. Anchoring chromatin loops to cancer (2017) Developmental Cell. 43(3)2009-2011 PMID: 28787588

  21. Wang, P., Byrum, S., Fowler, FC., Pal, S., Tackett, AJ. and Tyler, JK. Proteomic identification of histone post-translational modifications and proteins enriched at a DNA double-strand break (2017) Nucleic Acids Research. 45(19): 10923-10940. PMID: 29036368

  22. Aguilar, R. and Tyler, J.K. Thinking outside the cell: Replicating replication in vitro (2017) Molecular Cell. 65(1):5-7. PMID: 28061333

  23. Lee, SS and Tyler, JK. Stressed-out chromatin promotes longevity. (2016) Nature. 534: 625-6. PMID: 27357789

  24. Pal, S and Tyler, JK. Epigenetics and Aging. (2016) Science Advances. 2(7). PMID: 27482540

  25. Li, X., and Tyler, J.K. Nucleosome disassembly during non-homologous end joining in human cells, followed by concerted HIRA- and CAF-1-dependent chromatin reassembly. (2016) Elife. Jun 8:5. PMID: 27269284

  26. Wike, CL, Graves, HK, Wason, A., Byrum, S, Hawkins, R, Tackett, AJ, Gopalakrishnan, J., Schumacher, J and Tyler, J. Excess free histone H3 localizes to centrosomes for proteasome-mediated degradation during mitosis in metazoans. (2016) Cell Cycle. June 1:0. PMID: 26711261

  27. Pal, S, Graves, HK, Ohsawa, R, Huang, T-h, Wang, P., Harmacek, L., Tyler, JK. The commercial antibodies widely used to measure H3 K56 acetylation are non-specific in human and Drosophila cells. (2016) PLoS One. May 17:11. PMID: 27187594

  28. Graves, H., Wang, P-P., Lagarde, M., Chen, Z., Tyler, J.K. Mutations that prevent or mimic persistent post-translational modification of the histone H3 globular domain cause lethality and growth defects in Drosophila. (2016) Epigenetics Chromatin. Feb 29; 9:9. PMID: 26933451

  29. Wike CL, Graves HK, Hawkins R, Gibson MD, Ferdinand MB, Zhang T, Chen Z, Hudson DF, Ottesen JJ, Poirier MG, Schumacher J, Tyler JK. Aurora-A mediated histone H3 phosphorylation of threonine 118 controls condensin I and cohesin occupancy in mitosis. (2016) Elife Feb 16;5. PMID: 26878753

  30. Chen K, Hu Z, Xia Z, Zhao D, Li W, Tyler JK. The overlooked fact: fundamental need of spike-in controls for virtually all genome-wide analyses. (2015) Molecular and Cellular Biology 36(5):662-7. PMID: 26711261

  31. Das, C., Roy, S., Namjoshi, S., Malarkey, C.S., Jones, D.N.M, Kutateladze, T.G., Churchill, M.E.A., and Tyler, J.K. Recognition of acetylated histone H3 lysine 56 and the histone chaperone ASF1 by the CBP bromodomain promotes acetylation of non-chromatin bound histones. (2014) PNAS111(12), E1072-81. PMID: 24616510

  32. Hu Z, Chen K, Xia Z, Chavez M, Pal S, Seol J-H, Chen C-C, Li W, Tyler JK (2014) Nucleosome loss leads to global transcriptional upregulation and genomic instability during yeast aging. Genes and Development 15;28(4):396-408. PMID: 24532716

  33. Hammond SL, Byrum SD, Namjoshi S, Graves HK, Dennehey BK, Tackett AJ, Tyler JK (2014) Mitotic phosphorylation of histone H3 threonine 80. Cell Cycle 13(3). PMID: 24275038

  34. Dennehey BK, Noone S, Liu WH, Smith L, Churchill MEA, Tyler JK (2013) The C-terminus of the histone chaperone Asf1 crosslinks to histone H3 in yeast and promotes the interaction with histones H3 and H4. Molecular and Cellular Biology 33(3), 605-21. PMID: 23184661

  35. Chen K, Xi Y, Pan X, Li Z, Kaestner K, Tyler JK, Dent S, He X, Li W (2013) DANPOS: Dynamic Analysis of Nucleosome Position and Occupancy by Sequencing. Genome Research 23(2)341-51. PMID: 23193179

  36. Ohsawa R, Seol J-H, Tyler JK (2013) At the intersection of non coding RNAs, DNA repair, chromatin structure and cellular senescence. Frontiers in Genetics 4:136. PMID: 23967007

  37. Dennehey B, Tyler JK (2013) Chromatin assembly and disassembly during DNA repair and DNA replication. Chapter 2, Fundamentals of Chromatin. Edited by J. Workman.

    Budhavarapu V, Chavez M, Tyler JK (2013) How is epigenetic information maintained through DNA replication? Epigenetics and Chromatin 6(1):32. PMID: 24225278

  38. Feser J, Truong D, Das C, Carson JJ, Kieft J, Harkness T, Tyler J (2010) Elevated histone expression promotes life span extension. Molecular Cell 39:724-35. PMID: 20832724

  39. Das C, Tyler JK, Churchill MEA (2010) Invited Review, The histone shuffle: histone chaperones in an energetic dance. Trends in Biological Sciences 35:476-89. PMID: 20444609

  40. Ransom M, Dennehey B, Tyler JK (2010) Chaperoning histones during DNA repair and replication. Cell 140:183-95. PMID: 20141833

  41. Ransom M, Williams SK, Dechassa ML, Das C, Linger J, Adkins M, Liu C, Bartholomew B, Tyler JK (2009) FACT and the proteasome promote promoter chromatin disassembly and transcriptional initiation. Journal of Biological Chemistry 284(35): 23461-71. PMID: 19574230

  42. Ohsawa R, Adkins M, Tyler, JK (2009) Epigenetic inheritance of an inducibly nucleosome-depleted promoter and its associated transcriptional state in the apparent absence of transcriptional activators. Epigenetics and Chromatin 2:11. PMID: 19747370

  43. Das C, Lucia S, Hansen K., Tyler JK (2009) CBP/p300-mediated acetylation of histone H3 on lysine 56. Nature 459, 113-17. PMID: 19270680

  44. Chen C-C, Carson J, Feser J, Tamburini B, Zabaronick S, Linger J, Tyler JK (2008) Acetylated lysine 56 on histone H3 drives chromatin assembly after repair and signals for the completion of repair. Cell 134:231-43. PMID: 18662539

  45. Williams S, Truong D, Tyler JK (2008) Acetylation in the globular core of histone H3 on lysine-56 promotes chromatin disassembly during transcriptional activation. Proceedings of the National Academy of Science 105:9000-05. PMID: 18577595

  46. Adkins MW, Williams SK, Linger J, Tyler JK (2007) Chromatin disassembly from the PHO5 promoter is essential for the recruitment of the general transcription machinery and coactivators. Mol Cell Biol 18:6372-82. PMID: 7620413

  47. Linger J, Tyler JK (2007) Chromatin disassembly and assembly during DNA repair. Mutation Research 618:52-64. PMID: 17303193

  48. Williams S, Tyler JK (2007) Transcriptional regulation by chromatin disassembly and reassembly. Current Opinions in Genetics and Development 17:88-93. PMID: 17307351

  49. Adkins MW, Carson JJ, English CM, Ramey JC, Tyler JK (2007) The histone chaperone anti-silencing function 1 stimulates the acetylation of newly synthesized histone H3 in S-phase. Journal of Biological Chemistry 12:1334-40. PMID: 17107956

  50. English CM, Adkins MW, Carson JJ, Churchill MEA, Tyler JK (2006) Structural basis for the histone chaperone activity of Asf1. Cell 127:495-508. PMID: 17081973 PMCID: PMC2981792

  51. Linger J, Tyler JK (2006) Global replication-independent histone H4 exchange in budding yeast. Eukaryotic Cell 5:1780-87. PMID: 16936140 PMCID: PMC1595336

  52. Tamburini B, Carson J, Linger JG, Tyler JK (2006) Dominant mutants of the Saccharomyces cerevisiae ASF1 histone chaperone bypass the need for CAF-1 in transcriptional silencing by altering histone and Sir protein recruitment. Genetics 173:599-610. PMID: 16582440

  53. Adkins MW, Tyler JK (2006) Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions. Molecular Cell 3:405-16. PMID: 16455495

  54. Schulz LL, Tyler JK (2006) The histone chaperone ASF1 localizes to active DNA replication forks to mediate efficient DNA replication. FASEB J 20(3):488-90. PMID: 16396992

  55. Tyler JK (2006) Chromatin Assembly Methods. Chapter 38, Cell Biology: a Laboratory Handbook. Edited by Julio E. Celis.

  56. English CM, Maluf NK, Tripet B, Churchill MEA, Tyler JK (2005) ASF1 binds to a heterodimer of histones H3 and H4: a two-step mechanism for the assembly of the H3-H4 heterotetramer on DNA. Biochemistry 44:13673-82. PMID: 16229457

  57. Tamburini B, Carson J, Adkins M, Tyler JK (2005) Functional conservation and specialization among eukaryotic anti-silencing function 1 histone chaperones. Eukaryotic Cell 4:1583-90. PMID: 16151251

  58. Linger J, Tyler JK (2005) The yeast histone chaperone chromatin assembly factor 1 protects against double-strand DNA-damaging agents. Genetics 171:1513-22. PMID: 16143623

  59. Tamburini B, Tyler JK (2005) Localized histone acetylation and deacetylation triggered by the homologous recombination pathway of double-strand DNA repair. Molecular and Cellular Biology 25:4903-13. PMID: 15923609

  60. Schulz L, Tyler JK (2005) Heterochromatin focuses on senescence. Molecular Cell 17:168-70. PMID: 15664186

  61. Zabaronick S, Tyler JK (2005) The histone chaperone anti-silencing function 1 is a global regulator of transcription independent of passage through S phase. Molecular and Cellular Biology 25:652-60. PMID: 15632066

  62. Adkins MW, Tyler JK (2004) The histone chaperone Asf1p mediates global chromatin disassembly in vivo. Journal of Biological Chemistry 279:52069-74. PMID: 15452122

  63. Ramey CJ, Howar S, Adkins M, Linger J, Spicer J, Tyler JK (2004) Activation of the DNA damage checkpoint in yeast lacking the histone chaperone anti-silencing function 1. Molecular and Cellular Biology 24:10313-27. PMID: 15542840

  64. Adkins M, Howar S, Tyler JK (2004) Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes. Molecular Cell 14:657-66. PMID: 15175160

  65. Tyler JK*, Collins KA, Prasad-Sinha J, Amiott E, Bulger M, Harte PJ, Kobayashi R, Kadonaga JT (2001) Interaction between the Drosophila CAF-1 and ASF1 chromatin assembly factors. Molecular and Cellular Biology 21:6574-84. *Corresponding author. PMID: 11533245

  66. Tyler, JK, Adams CR, Chen S-R, Kobayashi R, Kamakaka RT, Kadonaga JT (1999) The RCAF complex mediates chromatin assembly during DNA replication and repair. Nature 402:555-60. PMID: 10591219

  67. Tyler, JK, Kadonaga JT (1999) The "dark side" of chromatin remodeling: repressive effects on transcription. Cell 99:443-46. PMID: 10589670

 

 

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